A bovine molQTL cohort for three reproductive tissues
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https://zenodo.org/record/8093286
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资源简介：
Transcriptome and whole-genome sequence variant data for a cohort of 118 post-pubertal bulls, as well as GWAS summary statistics for a cohort of 3736 bulls.
This dataset contains gene abundance (in TPM, both raw and normalized estimates), splicing variation (from LeafCutter), and whole-genome sequence variants (raw, unfiltered) for 118 bulls. Gene abundance and splicing variation is available for three reproductive tissues (testis, epididymis, vas deferens). Autosomal, X-chromosomal, and MT genes are included.
All sample-IDs refer to ENA accession numbers. A cross-table (cohort_accession_numbers.xlsx) allows to assign transcriptome to genotype data.
The bovine ARS-UCD1.2 assembly and the corresponding Ensembl annotation (ftp://ftp.ensembl.org/pub/release-104/gtf/bos_taurus/Bos_taurus.ARS-UCD1.2.104.chr.gtf.gz) was used
创建时间：
2023-12-20
