Data and Code for article "Tuning Collective Behaviour in Zebrafish with Genetic Modification"

Data and Code Repository

Description

This is the data repository for manuscript Tuning Collective Behaviour in Zebrafish with Genetic Modification

gate-analysis-20220405.tar.gz: The raw data and compelete data processing pipeline for the 2D swimming shape analysis. (Figure 2 in the manuscript)

plot-experiment-schematic.tar.xz: The code to plot the experimental setup. (Figure 3a and 3b in the manuscript)

analysis-one-fish-comparison.tar.xz: The code and data for the single--fish 3D behavioural analysis (Figure 3c in the manuscript).

many-fish-analysis.tar.gz: The trajectory data and compelete data processing pipeline for one 3D many fish analysis (Figure 3d in the manuscript).

plot-lengthscales.tar.xz: The code and data to plot the lengthscales and simulation results (Figure 4 in the manuscript).

plot-shape-pca-method.tar.xz: The code to generate the PCA methodology summary plot (Figure S2 in the manuscript).