Additional raw data in `Cell-type-specific co-expression inference from single cell RNA-sequencing data'.

This repository holds the additional raw data used to generate figures in the publication "Cell-type-specific co-expression inference from single cell RNA-sequencing data" (preprint version: https://www.biorxiv.org/content/10.1101/2022.12.13.520181v1).

Table of contents:

Figure_1B.rds: 

raw data of Figure 1B 

co-expression estimates of 500*499/2 gene pairs across 100 replicates for 7 methods under two settings of sequencing detph variations

Supplementary_Figure_1B.rds: 

raw data of Supplementary Figure 1B 

co-expression estimates of 500*499/2 gene pairs across 100 replicates for 7 methods under two settings of sequencing detph variations

Supplementary_Figure_2.rds: 

raw data of Supplementary Figure 2 

empirical power evaluated for 4999 gene pairs and 6 methods

Figure_3B.rds: 

raw data of Figure 3B

co-expression estimates of a network of 500 genes for 9 methods across 100 replicates

Additional_Raw_Data.xlsx

raw data of Figure 3A: (geometric mean expression levels, co-expression estimates) for 4999 gene pairs and 11 methods

raw data of Figure 3C: running times for 11 methods

raw data of Supplementary Figure 3: (geometric mean expression levels, co-expression estimates) for 4999 gene pairs and 11 methods under two settings of sequencing detph variations