Thesis: Supplementary Tables and reports

Contains Supplementary information for my Thesis

Files:

model_perfs_and_motifs_top5_annot.mht: MHTML table containing top5 motifs, B1H alignments and dataset quality annotations along with other information. Download and open in Google Chrome browser

all_reports.tar.gz : All TF Modisco reports bundled together which are linked in the Table as a standalone resource. Contains every motif, submotif , motif hit distribution with respect to the peak summits and alignments to B1H recognition-code

model_archive.tar.gz : All models

models_info.tsv: Maps model name to ENCODE ids and dataset related information.

Datasets used other than ENCODE use these keys: 

HughesNB:

Najafabadi, Hamed S., et al. "C2H2 zinc finger proteins greatly expand the human regulatory lexicon." Nature biotechnology 33.5 (2015): 555-562.

HughesGR:

Schmitges, Frank W., et al. "Multiparameter functional diversity of human C2H2 zinc finger proteins." Genome research 26.12 (2016): 1742-1752.

ChipExo:

Imbeault, Michaël, Pierre-Yves Helleboid, and Didier Trono. "KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks." Nature 543.7646 (2017): 550-554.