Supplementary material for "Strong impact of the recent Highly Pathogenic Avian Influenza panzootic on population dynamics of a long-lived bird"

R code and data to reproduce all the analyses presented in the paper. There are five files: Code_HPAI.R - Code to run the model with data from 1993 to 2024 (i.e., including HPAI panzootic outbreaks) + projections until 2034 data_hpai.RData - Necessary data to run the model with data from 1993 to 2024 (i.e., including HPAI panzootic outbreaks) + projections until 2034 Code_NoHPAI.R - Code to run the model with data from 1993 to 2019 (i.e., excluding HPAI panzootic outbreaks) + projections until 2034 data_nohpai.RData - Necessary data to run the model with data from 1993 to 2019 (i.e., excluding HPAI panzootic outbreaks) + projections until 2034 Plots_Publish.R – Code to run the plots that appear in the manuscript. The code runs with the .RData files generated by running the analyses (files number 1 and 3) Instructions: Download all files in the same folder and set it as a working directory. The code is set to find and load the data from the working directory.