The extent of introgression between incipient Clarkia species is determined by temporal environmental variation and mating system

This zipped file is a directory containing all of the scripts and data need to reproduce analyses in the paper "The extent of introgression between incipient Clarkia species is determined by temporal environmental variation and mating system." There is a README document in the main directory that contains all information necessary to navigate the file structure, code, and data. There are a suite of folders that have code run in the command line - primarily bioinformatic code. There is an R markdown file (and a rendered html) with all code needed to make figures/tables/analyses in manuscript. There are two subdirectories "R_input_data" and "R_output" that are used with the R markdown file.