Additional file 3

This file contains tables summarizing the ancestral gene reconstruction by Count v10.04. The ancestral gene content was reconstructed for the entire data set, as well as for subsets of orthologous gene families corresponding to different functional groups including (i) CAZymes; (ii) plant cell wall degrading enzymes (PCWDEs); (iii) PCWDEs involved in the degradation of cellulose, hemicellulose, lignin, pectin, starch and inulin; (iv) peptidases; (v) peptidase inhibitors; (vi) transporters; (vii) transporters involved in the exchange of carbohydrates; (viii) transporters involved in the exchange of amino acids; (ix) transporters involved in the exchange of lipids; (x) transporters involved in the exchange of nitrogen; and (xi) effectors.