Additional file 1 of SARS-CoV-2 variants of concern and spike protein mutational dynamics in a Swedish cohort during 2021, studied by Nanopore sequencing
Additional file 4: Table S4. HIV-1 transcripts identified in the different cellular models. Reads mapping to each isoform were counted and pooled for each HIV-1 expression model. Isoforms represented
These files contain the nanopore long reads produced by R9.4 MinION, basecalled and demultiplexed by Albacore v2.1.3. Half of each strain's sample underwent end repair, and half did not - these wer
Nanopore sequencing raw data with data processing scripts and processed data presented in chapter 6 of PhD thesis by Justas Ritmejeris. Data was acquired using Oxford Nanopore Technologies MinION sequ
This dataset and code repository accompany the manuscript “Read-Level Error Characterization of Long-Read Nanopore-Based Sequencing of the Circular DNA Virome” submitted to Nucleic Acids Research (Jun
Additional file 3: Table S3. NL4-3 splice site counts in HIV-1 expressing samples. Reads overlapping potential SD/SA sites were counted and pooled for each HIV-1 expressing sample (infected T cells; T