KCNJ6 Supplemental Tables

Supplemental tables for Popova et al., " Alcohol reverses the effects of KCNJ6 (GIRK2) noncoding variants on excitability of human glutamatergic neurons" Supplemental Table 1. SNPs identified in RNAseq samples. Variants were identified in the region surrounding KCNJ6 (chr21: 37499112-38245792) using samtools mpileup to bcftools call, followed by filtering to remove low quality. Results were loaded into the Ensembl VEP tool. A dot (“.”) indicates missing data and/or low quality. The reference allele and alternate alleles were obtained from the UCSC Genome Table Browser. Supplemental Table 2. Differentially expressed genes (DEG) comparing AF to UN without exposure to ethanol. The table contains all output from DESeq2 results. Excel filters are set to show only genes significantly different (padj 0.585). Release the filters to see the full list. Supplemental Table 3. Enriched Gene Ontology-Biological Process (GO-BP) terms from genes increased in AF relative to UN. Supplemental Table 4. Enriched Gene Ontology-Biological Process (GO-BP) terms from genes decreased in AF relative to UN.