Additional file 1 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies
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Additional file 1: Supplementary Table S1. WGS Data Sets from 5 NGS Technologies. WGS Libraries were made from the fresh DNA from HCC1395 and HCC1395BL cell lines. 42 Illumina-short read libraries were prepared by using Illumina TruSeq DNA PCR Free (1000ng) protocol and sequenced on 3 Illumina platforms including NovaSeq, Hiseq and HiSeq 10x across 6 sequencing centers. 22 10X Genomics WGS Linked-read libraries were prepared using 10X Chromium Genome V2 kit and sequenced on illumina HiSeq. 2 PacBio long-read protocol libraries were prepared with 10kb library protocol and sequenced on Sequel V2.1 chemistry. 2 Oxford Nanopore SQK-LSK109 ligation kit prepared libraries were run on MinONT flowcells. 6 Dovetail HiC libraries were prepared using the Dovetail SELVA Library Prep kit and sequenced on Illumina.
提供机构：
Chen, Zhong; Mason, Christopher E.; Li, Zhipan; Kusko, Rebecca; Stahlberg, Eric; Li, Jing; Wang, Limin; Xiao, Chunlin; Chen, Xiongfong; Shetty, Jyoti; German, Oksana; Choudhari, Sulbha; Meerzaman, Daoud; Liu, Tiantain; Colgan, Michael; Natarajan, Aparna; Bombardi, Robin; Granat, Anastasiya; Hastie, Alex R.; Truong, Tiffany; Hong, Karl; Wang, Charles; Fang, Li Tai; Yang, Zhaowei; Pang, Andy Wing Chun; Moshrefi, Ali; Kellman, Ben; Xiao, Wenming; Shen, Tsai-wei; Talsania, Keyur; Mankinen, Veronnica; Zhao, Yongmei; Smirnova, Tatyana; Carroll, Andrew; Chen, Wanqiu; Collins, Jack; Tran, Bao; Kriga, Yuliya; Jaeger, Erich
创建时间：
2024-08-13
