Additional file 1 of Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies
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Additional file 1: Supplementary Table S1. WGS Data Sets from 5 NGS Technologies. WGS Libraries were made from the fresh DNA from HCC1395 and HCC1395BL cell lines. 42 Illumina-short read libraries were prepared by using Illumina TruSeq DNA PCR Free (1000ng) protocol and sequenced on 3 Illumina platforms including NovaSeq, Hiseq and HiSeq 10x across 6 sequencing centers. 22 10X Genomics WGS Linked-read libraries were prepared using 10X Chromium Genome V2 kit and sequenced on illumina HiSeq. 2 PacBio long-read protocol libraries were prepared with 10kb library protocol and sequenced on Sequel V2.1 chemistry. 2 Oxford Nanopore SQK-LSK109 ligation kit prepared libraries were run on MinONT flowcells. 6 Dovetail HiC libraries were prepared using the Dovetail SELVA Library Prep kit and sequenced on Illumina.
