首页/数据集/Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase

Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase

ChEBI2013-10-05 更新2026-07-21 收录

植物microRNA

葡萄转录组测序

数据链接：

https://www.ebi.ac.uk/biostudies/ArrayExpress/studies/E-GEOD-24531 数据链接链接失效反馈

官方服务：

资源简介：

Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase

应用场景：

创建时间：

2013-10-05

植物microRNA

大豆研究

MicroRNAs (miRNAs) are a class of endogenous small non-coding RNAs (19â24 nt) that regulates de gene expression, mainly through mRNA targets cleavage and translation inhibition. In plants, miRNAs ha

NIAID Data Ecosystem110

we performed microRNA deep sequencing, analyzed the microRNAs and revealed the function of the corresponding target genes, as the first step to understanding the role of microRNAs in S. officinarum. 268 candidate miRNAs were screened from sequencing microRNA library with the total RNA from sugarcane leaves using the RNA-seq ESTs of all tissue of Saccharum officinarum from our group， public sugarcane ESTs from NCBI and the reference sorghum genome from Phytozome V9. After further analysis, 43 homologous miRNAs and 9 novel miRNAs were identified. Out of the 52 miRNAs, 6 were randomly chosen and verified by qRT-PCR and the putative miRNA targets’ function was analyzed. The identification of miRNAs and their targets not only will enable to understand the roles of miRNAs in sugarcane development and growth, but also enhances the understanding of miRNA-dependent mechanisms in highly polyploid species. Identification and Characterization of microRNAs from Saccharum officinarum L by deep s

植物microRNA

甘蔗基因组

In modern sugarcane cultivars, around 70-80% of the genetic information originates from Saccharum officinarum, which contributed important sugar content traits. Although several studies have identifie

NIAID Data Ecosystem30

Unfiltered miRDeep2 Results

植物microRNA

非编码RNA分析

Contained herein are the raw data from miRDeep2 including novel miRNAs identified in pre-chasmogamous and pre-cleistogamous meristematic tissue of the North American violet Viola pubescens.

Figshare2020-02-21 更新20

Additional file 1: of Identification and characterisation of microRNAs and their target genes in phosphate-starved Nicotiana benthamiana by small RNA deep sequencing and 5â RACE analysis

植物microRNA

磷胁迫响应

Table S1. Microsoft Excel Worksheet (.xlsx). sRNA deep sequencing read matches to predicted pri-miRNA hairpins. Table S2. Computationally predicted miRNA targets in N. benthamiana. Table S3. Top targe

Figshare2018-12-18 更新90

mir398 mutant analysis-Analysis of miR398 mutants.

植物microRNA

突变体分析

mir398 mutant analysis-Analysis of miR398 mutants.

ChEBI2010-05-25 更新20