Figure data for Publication Trenzinger et al. in Lab Chip 2024

Description of dataset

This dataset includes all necessary information to reproduce the figures from the publication "Microdevice for confinement of T-cells on functionalized bio-interface".

DOI: https://doi.org/10.1039/D5LC00248F

Article: Microdevice for confinement of T-cells on functionalized bio-interfaces

Authors

Christoph Trenzinger,*a   Caroline Kopittke,a   Barbora Kalousková,a   Nemanja Šikanić,a   Marina Bishara,a   Gerhard J. Schütza  and  Mario Brameshuber*a

* Corresponding authorsa Institute of Applied Physics, TU Wien, Wiedner Hauptstraße 8-10, 1040 Vienna, Austria

Contact

E-mail: [e-mail], [e-mail]

Technical details

Reproduction of the figures

Python: for all figures generated with Python, the corresponding Jupyter Notebook file is provided. The _readme.txt contains information about the files in the corresponding folder, requirements.txt contains information about the Python version and dependencies.

Matlab: the scripts to analyse data and to generate figures is provided in the corresponding folders. notes.txt files contain remarks for the analysis. All numerical data for analysis with Matlab is provided in CSV format.

Required Software

Matlab (Mathworks), tested with version 2019b

Cellprofiler (4.2.1), https://cellprofiler.org

Python (version 3.10), depencies are listed in the file requirements.txt

Licenses

Data is licensed under the Creative Commons Attribution 4.0 InternationalSoftware is licensed under the MIT license

Further notes

The .cpproj files are CellProfilerProject files, containing data in HDF5 format.The .czi files are Carl Zeiss Imaging formats, and can be read e.g.with the bio-formats plugin for ImageJ/Fiji.