CARD

A table provides information of the antibiotic resistance genes in each sample.
Template: Hit of resistant genes in CARD
Accession: NCBI accession number of the template
Genome: Strain names where the template gene is found
Species: The species of the strain
resistGene: Gene name if available.
resistMechanism: Mechanism of resistance interpreted by CARD
Zoliflodacin-unknown (multiple columns): Antibiotics whether the gene is predicted to be resistant to, including unknown.
Score, Expected, Template_length, Template_Identity, Template_Coverage, Query_Identity, Query_Coverage, Depth, q_value, p_value: Parameters reported by CARD to show how well the match is.
shotgunReadcount: Number of reads for each sample after decontamination of human reads.
RelavantPercentInCARD: The number of reads matched to the template resistant gene / Total reads matched to all CARD genes in the sample.
PercentageInShotgun: The number of reads matched to the template resistant gene / Total reads in the sample.
Mutation: Information whether the antibiotic resistance is conferred by mutation.
SampleID: Sample ID for each shotgun sequencing