CARD

A table provides information of the antibiotic resistance genes in each sample. Template: Hit of resistant genes in CARD Accession: NCBI accession number of the template Genome: Strain names where the template gene is found Species: The species of the strain resistGene: Gene name if available. resistMechanism: Mechanism of resistance interpreted by CARD Zoliflodacin-unknown (multiple columns): Antibiotics whether the gene is predicted to be resistant to, including unknown. Score, Expected, Template_length, Template_Identity, Template_Coverage, Query_Identity, Query_Coverage, Depth, q_value, p_value: Parameters reported by CARD to show how well the match is. shotgunReadcount: Number of reads for each sample after decontamination of human reads. RelavantPercentInCARD: The number of reads matched to the template resistant gene / Total reads matched to all CARD genes in the sample. PercentageInShotgun: The number of reads matched to the template resistant gene / Total reads in the sample. Mutation: Information whether the antibiotic resistance is conferred by mutation. SampleID: Sample ID for each shotgun sequencing