Mindboggle-101 atlases (anatomical labels from a population of brains)

The Mindboggle-101 surface and volume brain atlases were generated as part of the Mindboggle project (http://mindboggle.info) and are licensed under a Creative Commons License. The anatomical labels are combined across individually labeled brain volumes or surfaces from Mindboggle-101 according to the Desikan-Killiany-Tourville (DKT) labeling protocol: \"101 labeled brain images and a consistent human cortical labeling protocol\" Arno Klein, Jason Tourville. Frontiers in Brain Imaging Methods. 6:171. DOI: 10.3389/fnins.2012.00171 Volume atlas construction The joint fusion algorithm (Hongzhi Wang, 2013; distributed with ANTs) was used to construct probabilistic labels of the 20 OASIS-TRT brains, including a single volume of probabilities corresponding to the winning labels. Joint fusion was performed on the 20 brains after antsRegistration warped them to the OASIS-30 Atropos template. Results are also given after affine transformation to the OASIS-30 Atropos template in MNI152 space, and after resampling to 2mm^3 resolution. Code and documentation: CHANGELOG.txt: log of changes make_jointfusion_atlas.txt: code to make a joint fusion atlas resample2mm.txt: code to resample a volume to 2mm^3 resolution make_freesurfer_classifier_atlas.txt: software to make a FreeSurfer classifier atlas Joint fusion volume atlases (2013) OASIS-TRT-20_jointfusion_DKT31_CMA_labels_in_OASIS-30_v2.nii.gz OASIS-TRT-20_jointfusion_DKT31_CMA_labels_in_MNI152_v2.nii.gz OASIS-TRT-20_jointfusion_DKT31_CMA_labels_in_MNI152_2mm_v2.nii.gz Joint fusion label probabilities (2013) OASIS-TRT-20_jointfusion_DKT31_CMA_label_probabilities_in_OASIS-30_v2.nii.gz OASIS-TRT-20_jointfusion_DKT31_CMA_label_probabilities_in_MNI152_v2.nii.gz OASIS-TRT-20_jointfusion_DKT31_CMA_label_probabilities_in_MNI152_2mm_v2.nii.gz Cortical surface atlases (FreeSurfer classifier .gcs file) freesurfer_atlas_DKT31labels101subjects.tar.gz: from all 101 participants (2016) DKTatlas40.tar.gz: from 40 participants (2012)