Dataset: Large-scale benchmarking of prokaryotic annotation tools across thousands of species

This repository contains the out of the workflow analysis used in the following work: Large-scale benchmarking of prokaryotic annotation tools across thousands of species This Nextflow workflow was developed to benchmark the performance of four open-source prokaryotic genome annotation tools: Prokka, Bakta, EggNOG-mapper, and PGAP. We evaluated these tools on 180,504 diverse genomes to provide guidance on tool selection based on genome characteristics and various investigated metrics. For furter details please look at the publication. The file contains raw output of analysis of perfromance of 4 annotation tools each particular group: Escherichia coli genomes Bacteria kingdom Genome Taxonomy Database representative genomes that are not assigned as Metagenome Assembled Genome Bacteria kingdom Genome Taxonomy Database representative genomes that are assigned as Metagenome Assembled Genome Archeae kingdom Genome Taxonomy Database representative genomes Genomes were random 0.5%, 1%, 2% deletion were randomly introduced to introduce frameshifts This data is released under Creative Commons Attribution 4.0 International licence