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DMS-MaPseq: A genome-wide or targeted approach for RNA structure probing in vivo

Alliance of Genome Resources2026-08-01 收录

RNA结构

体内RNA结构分析

数据链接：

https://www.yeastgenome.org/dataset/GSE84537 数据链接链接失效反馈

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Here we present dimethyl sulfate mutational profiling with sequencing (DMS-MaPseq), which encodes DMS modifications as mismatches using a thermostable group II intron reverse transcriptase (TGIRT)

应用场景：

RNA结构

植物生物学

Additional file 2: Table S1. G-rich regions with folding potential identified by rG4-seq with K+. TableS2. G-rich regions with folding potential identified by rG4-seq with K++PDS. TableS3. Gini index

DataCite Commons2024-02-16 更新40

First X-ray structure of RNA containing guanosine phosphorodithioate

RNA结构

"RNA研究"

First X-ray structure of RNA containing guanosine phosphorodithioate Descriptor: 5'-R(*CP*GP*CP*(2SG)P*AP*AP*UP*UP*AP*GP*CP*G)-3', STRONTIUM ION Authors: Pallan, P.S, Egli, M. Deposit date: 2014-09-13

Protein Data Bank Japan2023-09-20 更新20

NMR structure of the 5'-terminal hairpin of the 7SK snRNA

RNA结构

核磁共振结构解析

NMR structure of the 5'-terminal hairpin of the 7SK snRNA Descriptor: 7SK snRNA Authors: Bourbigot, S, Dock-Bregeon, A.C, Coutant, J, Kieffer, B, Lebars, I. Deposit date: 2016-02-25 Release date: 2016

Protein Data Bank Japan2024-06-19 更新20

Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo. Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

RNA结构

mRNA体内去折叠

We present an approach for globally monitoring RNA structure in native conditions in vivo with single nucleotide precision. This method is based on in vivo modification with dimethyl sulfate (DMS), wh

NIAID Data Ecosystem30

Additional file 11 of Predicting protein-binding regions in RNA using nucleotide profiles and compositions

RNA-蛋白质相互作用

RNA结构

Results of testing our model on RNA sequences with different negative datasets. The performance of our model with different negative datasets whose instances were selected in the upstream region of ea

Figshare2017-03-16 更新20

DMS-MaPseq: A genome-wide or targeted approach for RNA structure probing in vivo

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