CoVerage Results

Datasets generated from GISAID metadata for the figures in the CoVerage manuscript. Data includes the results for the months of November 2021 to January 2021 and January 2023 to March 2023. 11_2021 11-2021_fig3_lineage_dynamics_summary_statistics.csv - summary statistics or frequency data for selected pVOIs for the month of 11-2021 11-2021_fig4_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 11-2021 using the scoring technique of applying weights at known antigenic sites on the spike protein 11-2021_fig4_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 11-2021 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation 11-2021_fig4_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 11-2021 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation 11-2021_fig4_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 11-2021 using the scoring method of applying weights at all sites across the spike protein 12_2021 12-2021_fig3_lineage_dynamics_summary_statistics.csv - summary statistics or frequency data for selected pVOIs for the month of 12-2021 12-2021_fig4_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 12-2021 using the scoring technique of applying weights at known antigenic sites on the spike protein 12-2021_fig4_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 12-2021 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation 12-2021_fig4_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 12-2021 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation 12-2021_fig4_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 12-2021 using the scoring method of applying weights at all sites across the spike protein 01_2022 01-2022_fig4_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 01-2022 using the scoring technique of applying weights at known antigenic sites on the spike protein 01-2022_fig4_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 01-2022 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation 01-2022_fig4_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 01-2022 using the scoring method of applying weights at all sites across the spike protein 01-2022_fig4_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 01-2022 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation 01_2023 01-2023_fig5_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 01-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein 01-2023_fig5_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 01-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation 01-2023_fig5_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 01-2023 using the scoring method of applying weights at all sites across the spike protein 01-2023_fig5_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 01-2023 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation 02_2023 02-2023_fig5_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 02-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein 02-2023_fig5_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 02-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation 02-2023_fig5_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 02-2023 using the scoring method of applying weights at all sites across the spike protein 02-2023_fig5_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 02-2023 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation 03_2023 03-2023_fig5_antigenic_scores_map_visualization.csv - calculated country antigenic scores for the month of 03-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein 03-2023_fig5_antigenic_scores_ranked.csv - calculated antigenic scores of circulating lineages for the month of 03-2023 using the scoring technique of applying weights at known antigenic sites on the spike protein, ranked by antigenic score with WHO variant designation 03-2023_fig5_antigenic_scores_map_visualization_all_sites.csv - calculated country antigenic scores for the month of 03-2023 using the scoring method of applying weights at all sites across the spike protein 03-2023_fig5_antigenic_scores_ranked_all_sites.csv - calculated antigenic scores of circulating lineages for the month of 03-2023 using the scoring method of applying weights at all sites across the spike protein, ranked by antigenic score with WHO variant designation