Additional file 2 of Transcriptomics of Gabra4 knockout mice reveals common NMDAR pathways underlying autism, memory, and epilepsy

Additional file 2: Table S1. The 15,254 expressed genes. Table S2. The gene list of hippocampal interactome. Table S3. The 9205 interactions among the expressed genes. Table S4. The 1247 differentially expressed genes. Table S5. The 787 upregulated genes. Table S6. The 460 downregulated genes. Table S7. The gene list of DEG subnetwork. Table S8. The gene list of ASD subnetwork. Table S9. The list of 647 epilepsy candidate genes. Table S10. The gene list of epilepsy subnetwork. Table S11. The list of 909 learning/memory related genes. Table S12. The gene list of learning/memory subnetwork. Table S13. The KEGG clusters involved in ASD subnetwork. Table S14. The KEGG clusters involved in epilepsy subnetwork. Table S15. The KEGG clusters involved in learning/memory subnetwork. Table S16. The common KEGG clusters involved in three subnetworks. Table S17. Hippocampal gene-pathway bipartite network. Table S18. Hippocampal DEG gene-pathway bipartite network. Table S19. Hippocampal ASD gene-pathway bipartite network. Table S20. Hippocampal EP gene-pathway bipartite network. Table S21. Hippocampal LM gene-pathway bipartite network. Table S22. Genes involved in DEG gene-pathway bipartite network. Table S23. Genes involved in ASD gene-pathway bipartite network. Table S24. Genes involved in EP gene-pathway bipartite network. Table S25. Genes involved in LM gene-pathway bipartite network. Table S26. Hippocampal converged-pathway bipartite network module. Table S27. Genes involved in converged gene-pathway bipartite network module. Table S28. Comparison of enriched pathways in DEG-pathway bipartite network and those enriched in DEGs PPI network. Table S29. Comparison of enriched pathways in ASD gene-pathway bipartite network and those enriched in ASD PPI network. Table S30. Comparison of enriched pathways in EP gene-pathway bipartite network and those enriched in EP PPI network. Table S31. Comparison of enriched pathways in LM gene-pathway bipartite network and those enriched in LM PPI network.