S3 Table -

KEGG functional enrichment analysis of (A) up-regulated and (B), down-regulated pathways. Up-regulated (A) and down-regulated (B) KEGG functional enrichment analysis was performed on Infected Series Comparisons (0-7dpi)1, (0-21dpi)3 and (0-28dpi)4 and the Temporal Series Comparisons (7-14dpi)5, (7-21dpi)6, (7-28dpi)7 and (14-28dpi)9. Analysis of pairings (0-14dpi)2, (14-21dpi)8 and (21-28dpi)10 were excluded as there was no significant gene expression activity in theses Comparisons. KEGG pathways/ID number are set out or each Comparison in order of decreasing order. (XLSX)