Additional file 2 of Identification of Novel Quantitative Trait Loci for Culm Thickness of Rice Derived from Strong-Culm Landrace in Japan, Omachi

Additional file 2. Table S1. Comparison of the traits between Koshihikari and Omachi. Table S2. Summary of trait values in Koshihikari × Omachi RILs. Table S3. The estimation of effects of QTLs using a model constructed by the genotypes of four QTLs for culm diameter. Table S4. Information on markers used for genotyping RIL33 × Koshihikari F2. Table S5. Average of the trait values in each group of RILs classified according to combination of alleles at qCD3, qCD7-1 and qCD7-2. Table S6. The number of variants classified 'HIGH' or 'MODERATE' by the SNPEff. Table S7. Detailed information of genes which include mutations classified ‘HIGH’ by the SNPEff software. Table S8. Collection date of samples used for RNA-seq and number of DEGs detected for each sample. Table S9. Detail information about DEGs detected in qCD7-2. Table S10. Information of markers used in QTL analysis.