Additional file 5 of Targeted RNAseq assay incorporating unique molecular identifiers for improved quantification of gene expression signatures and transcribed mutation fraction in fixed tumor samples

Additional File 5: Table S1. List of genes included in SET4 assay. Table S2. Pairwise comparison of reproducibility (difference between replicates) between protocols. Table S3. Wilcoxon paired test and Levene’s test for concordance measures from comparison between FF and FFPE of individual gene measurements. Table S4. Concordance analysis of two BC signatures, and all the transcripts, between wtRNAseq and targeted RNAseq. Table S5. Wilcoxon paired test and Levene’s test for concordance measures from comparison between wtRNAseq and targeted RNAseq of individual gene measurements. Table S6. Summary statistics for allele fraction (AF). Table S7. Wilcoxon test for allele fraction (AF) comparison between FF and FFPE.