MOESM2 of Network analysis exposes core functions in major lifestyles of fungal and oomycete plant pathogens

Additional file 2 : Table S1. Organisms used in this study. Table S2. Frequency of annotated core families and their proteins (see sections “Core components” and “Construction of the pan-proteome network”, Methods). Table S3. Significantly enriched annotations in core components of Biotroph (B), Hemibiotroph (H) and Necrotroph (N). * Annotations starting with: K, KEGG ortholog; IPR, InterPro domain; MER, MEROPS proteases. ** Functional categories: N, nucleic acid related; L, light responsive; A, amino acid metabolism; T, transporters; C, carbohydrate metabolism; P, protease and peptidases; SM, secondary metabolites (including toxins); O, oxidoreductases (with no other function); Tf, trafficking; E, energy; ST, signal transduction. *** Following procedure described in methods, and subsequent manual curation. Table S4. Selected organisms used in KAAS analysis for identififcation of KEGG orthologs. Table S5. Normalized counts of gene families (components) connecting a pair of lifestyles. Numbers in parenthesis are the normalized mean values obtained from random 10,000 simulations for each lifestyle. A single asterisk indicates nonsignificant values (P > 0.01, non-parametric rank test, see Methods) (XLS 3237 kb)