Example Data and Models for "Atlas Alignment" Project

Overview This zip folder contains example data and models for "Atlas Alignment". "Atlas Alignment" is the Blue Brain toolbox to perform multimodal image registration. It includes both traditional and supervised deep learning models. Included files and structure atlas_data — contains brain atlases data nissl.npy — 25 μm nissl stains of whole mouse brain annotation.npy — 25 μm brain regions atlas annotation_hierarchy.json — hierarchical tree structure of brain regions contained in annotation.npy manual_registration.h5 — human expert annotations for multiple gene expression slices model_weights — pre-trained keras neural network for atlas registration global.h5 — weights and architecture of global network local.h5 — weights and architecture of local network