Intersected truth VCF for IMGAG validation data tumor-normal calling

Used commands curl https://s3.eu-central-1.amazonaws.com/platinum-genomes/2017-1.0/hg38/small_variants/NA12877/NA12877.vcf.gz --output NA12877.vcf.gzcurl https://s3.eu-central-1.amazonaws.com/platinum-genomes/2017-1.0/hg38/small_variants/NA12878/NA12878.vcf.gz --output NA12878.vcf.gz tabix NA12877.vcf.gztabix NA12878.vcf.gz bcftools isec -Oz -w1 NA12878.vcf.gz NA12877.vcf.gz -p outcd outcp 0000.vcf.gz ../NA12878.unique.vcf.gzgunzip NA12878.unique.vcf.gz# remove PEDIGREE lines 29 to 41bgzip NA12878.unique.vcftabix NA12878.unique.vcf.gz bcftools vcfisec output (README) The sites file is also supplied in this submission. This file was produced by vcfisec.The command line was: bcftools isec -Oz -w1 -p out NA12878.vcf.gz NA12877.vcf.gz Using the following file names:out/0000.vcf.gz for records private to NA12878.vcf.gzout/0002.vcf.gz for records from NA12878.vcf.gz shared by both NA12878.vcf.gz NA12877.vcf.gz Removed lines ##PEDIGREE=<Child=NA12877,Mother=NA12890,Father=NA12889>##PEDIGREE=<Child=NA12878,Mother=NA12892,Father=NA12891>##PEDIGREE=<Child=NA12879,Mother=NA12878,Father=NA12877>##PEDIGREE=<Child=NA12880,Mother=NA12878,Father=NA12877>##PEDIGREE=<Child=NA12881,Mother=NA12878,Father=NA12877>##PEDIGREE=<Child=NA12882,Mother=NA12878,Father=NA12877>##PEDIGREE=<Child=NA12883,Mother=NA12878,Father=NA12877>##PEDIGREE=<Child=NA12884,Mother=NA12878,Father=NA12877>##PEDIGREE=<Child=NA12885,Mother=NA12878,Father=NA12877>##PEDIGREE=<Child=NA12886,Mother=NA12878,Father=NA12877>##PEDIGREE=<Child=NA12887,Mother=NA12878,Father=NA12877>##PEDIGREE=<Child=NA12888,Mother=NA12878,Father=NA12877>##PEDIGREE=<Child=NA12893,Mother=NA12878,Father=NA12877>