Innovation and elaboration on the avian tree of life

Data to reproduce the analysis in "Innovation and elaboration on the avian tree of life".

The code to reproduce the analyses can be found on GitHub: https://github.com/TGuillerme/elaboration_exploration_bird_beaks

This folder contains all the raw and cluster-ran data used for the analysis.
[](https://zenodo.org/badge/latestdoi/337779300)

This folder contains the specific sub-folders:

## Raw
Contains the beak data (in `Beak_data`), the trees (in `Tree_data`) and the clades information.

## Processed
This folder contains the results of the `mcmcmcglmmm` for all birds (`shapespace_allbirds_lvl_superorder_order.MCMCglmm`) and for the passeriformes (`shapespace_passeriformes.MCMCglmm`).
These data can be calculated using the [`02-mcmcmcglmmm_analysis.Rmd`](https://github.com/TGuillerme/elaboration_exploration_bird_beaks/tree/master/Analysis) but takes 3 CPU years.

复现《鸟类生命树的创新与深化》分析所需的数据集如下。
分析复现的代码可于GitHub上找到：https://github.com/TGuillerme/elaboration_exploration_bird_beaks
本文件夹内包含用于分析的所有原始数据和聚类运行数据。
[](https://zenodo.org/badge/latestdoi/337779300)
本文件夹内包含以下特定子文件夹：
## 原始数据
包含喙部数据（位于`Beak_data`）、树状图数据（位于`Tree_data`）以及分支信息。
## 处理数据
此文件夹内包含针对所有鸟类（`shapespace_allbirds_lvl_superorder_order.MCMCglmm`）以及鸣禽类（`shapespace_passeriformes.MCMCglmm`）的`mcmcmcglmmm`分析结果。
这些数据可通过`02-mcmcmcglmmm_analysis.Rmd`（位于https://github.com/TGuillerme/elaboration_exploration_bird_beaks/tree/master/Analysis）计算得出，但需消耗3年的CPU时间。