Merged Regulatory Features for Summit

This Zenodo record distributes a modified regulatory annotation dataset created for Summit. It incorporates transformed data from ChIP-Atlas, ReMap 2022, and the DNase footprint atlas. Please cite or acknowledge these resources when using this dataset. Records were normalized into a shared schema, merged across sources by chromosome, and packaged as bgzip/tabix-indexed files. This dataset utilizes data from: ChIP-Atlas Oki S, Ohta T, Shioi G, et al. ChIP-Atlas: a data-mining suite powered by full integration of public ChIP-seq data EMBO Reports (2018) https://link.springer.com/article/10.15252/embr.201846255 Website: http://chip-atlas.org ReMap 2022 Hammal F, de Langen P, Bergon A, Lopez F, Ballester B ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments Nucleic Acids Research 50(D1):D316-D325 (2022) https://academic.oup.com/nar/article/50/D1/D316/6423925 Website: https://remap.univ-amu.fr DNAse footprint atlas Funk CC, Casella AM, Jung S, et al. Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types Cell Reports 32(7):108029 (2020) Website: https://www.sciencedirect.com/science/article/pii/S2211124720310147