Code for: Landform and lithospheric development contribute the assembly of mountain floras in China

This file includes ten R script and associated input data to generate the figures and tables of Zhao et al., (2024). R script were created using version 4.1.0. 1. Souce data.xlsx This is the input data file of the following R scrip. In total, 11 data sheet included in this file. The variables included in related data set is as following: mountain_ID: Sequence number of 140 mountain flora in China. site: Acronym of mountain flora. sp.number: Species richness, the total number of angiosperm plants in a mountain. landform: Landform type of each mountain flora (Danxia, Karst, Karst-Gr, Granitic, Desert). long: Longitude. lat: Latitude. PDI: Standardized effect size of phylogenetic diversity (PDFaith). NRI: Standardized effect size of mean phylogenetic distance. NTI: Standardized effect size of mean nearest taxon distance. pd: PDFaith, Faith’s phylogenetic diversity. MDT: Mean diversity time of species in a mountain. MDT.youngest: mean diversity time of 25% youngest species in a mountain. MDT.oldest: mean diversity time of 25% oldest species in a mountain. tectonic_type: the tectonic zone which a mountain located (craton and orogenic). Climatic variable, included bio2-bio19, is extracted from CHELSA climate data v. 1.2. bio2: Mean Diurnal Range. bio3: Isothermality (bio2/bio7) (*100) (Isoth). bio7: Temperature Annual Range (TAR). bio8: Mean Temperature of Wettest Quarter. bio10: Mean Temperature of Warmest Quarter (TWQ). bio11: Mean Temperature of Coldest Quarter (TCQ). bio12: Annual Precipitation. bio13: Precipitation of Wettest Month. bio15: Precipitation Seasonality (Coefficient of Variation). bio18: Precipitation of Warmest Quarter. bio19: Precipitation of Coldest Quarter. GBOTB.add.low: MDT.youngest based on a unpurned.add phylogeny. GBOTB.add.high: MDT.oldest based on a unpurned.add phylogeny. GBOTB.add.mean: MDT based on a unpurned.add phylogeny. GBOTB.low: MDT.youngest based on a unpruned phylogeny. GBOTB.high: MDT.oldest based on a unpruned phylogeny. GBOTB.mean: MDT based on a unpruned phylogeny. zwy.add.low: MDT.youngest based on a purned.add phylogeny. zwy.add.high: MDT.oldest based on a purned.add phylogeny. zwy.add.mean: MDT based on a purned.add phylogeny. zwy.low: MDT.youngest based on a purned phylogeny. zwy.high: MDT.oldest based on a purned phylogeny. zwy.mean: MDT based on a purned phylogeny. 2. 1_Model select & Supplementary Table 3-10.R Purpose of this script is model select, and Supplementary Table 3-10. The input data is sheet "Supplementary Fig. 9-15" available at Souce Data.xlsx. 3. 2_Visualization of Figure 3.R This script is used to generate the Figure 3. The input data is sheet "Figure 3" available at Souce Data.xlsx. 4. 3_Visualization of Figure 4.R This script is used to generate the Figure 4. The input data is sheet "Supplementary Fig. 9-15" available at Souce Data.xlsx. 5. 4_Visualization of Supplementary Fig. 2.R This script is used to generate the Supplementary Fig. 2. The input data is sheet "Supplementary Fig. 2" available at Souce Data.xlsx. 6. 5_Visualization of Supplementary Fig. 3.R This script is used to generate the Supplementary Fig. 3. The input data is sheet "Supplementary Fig. 3" available at Souce Data.xlsx. 7. 6_Visualization of Supplementary Fig. 4.R This script is used to generate the Supplementary Fig. 4. The input data is sheet "Supplementary Fig. 4" available at Souce Data.xlsx. 8. 7_Visualization of Supplementary Fig. 6.R This script is used to generate the Supplementary Fig. 6. The input tree file available at [https://doi.org/10.5061/dryad.b2rbnzsk1](https://doi.org/10.5061/dryad.b2rbnzsk1). 9. 8_Visualization of Supplementary Fig. 7.R This script is used to generate the Supplementary Fig. 7. The input data is sheet "Supplementary Fig. 7" available at Souce Data.xlsx. 10. 9_Visualization of Supplementary Fig. 8.R\ This script is used to generate the Supplementary Fig. 8. The input data is sheet "Supplementary Fig. 8" available at Souce Data.xlsx. 11. 10_Visualization of Supplementary Fig. 9-15.R This script is used to generate the Supplementary Fig. 9-15. The input data is sheet "Supplementary Fig. 9-15" available at Souce Data.xlsx.