Genomic and occurrence datasets for comparative phylogeography of pygmy perches

Datasets associated with Buckley et al. 2022 "Variation in intraspecific demography drives localised concordance but species-wide discordance in responses to Plio-Pleistocene climatic change." BMC Ecology and Evolution. Both_species_SDM_occurrences.csv = occurrence data used for ensemble species distribution models for Nannoperca australis and Nannoperca obscura. SPP_species_concatenated.phy = concatenated alignment for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) of 19,428 species-wide ddRAD loci. SPP_species_SNPs.str = genotypes for 44 Nannoperca australis and Nannoperca vittata (phylogenetic outgroup) at 17,389 'unlinked' (one per RAD locus) SNPs. SPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 9 populations of Nannoperca australis. YPP_species_concatenated.phy = concatenated alignment for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) of 21,051 species-wide ddRAD loci. YPP_species_SNPs.str = genotypes for 33 Nannoperca obscura and Nannoperca vittata (phylogenetic outgroup) at 15,715 'unlinked' (one per RAD locus) SNPs. YPP_pop_SNPs.zip = compressed folder of genotypes for 'unlinked' (one per RAD locus) individual population SNPs for 5 populations of Nannoperca obscura.