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Outcomes of in vitro growth experiments for metabolic model validation.

NIAID Data Ecosystem2026-05-10 收录

数据链接：

https://figshare.com/articles/dataset/Outcomes_of_in_vitro_growth_experiments_for_metabolic_model_validation_/30872924 数据链接链接失效反馈

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资源简介：

Outcomes of in vitro growth experiments for metabolic model validation.

应用场景：

创建时间：

2025-12-12

神经递质代谢

代谢模型验证

Abbreviations: 5-HT, serotonin; COMT, catechol O-methyltransferase; DA, dopamine; DAT, dopamine transporter; DOPAC, 3,4-dihydroxyphenylacetic acid; HVA, homovanillic acid; MAO, monoamine oxidase; SERT

NIAID Data Ecosystem50

Concordance scores of Recon3D.

代谢模型验证

一致性评估

Table of RPSvsRAS and RPSvsFFD Cohen’s kappa coefficients confidence intervals for all model reactions (when applicable). (XLSX)

Figshare2022-02-07 更新40

MOESM5 of Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D

代谢网络原子映射

代谢模型验证

Additional file 4. A MATLAB LiveScript used to standardise the algorithmic predictions, before comparison. Requires MATLAB 2016a and above.

Figshare2017-06-15 更新30

Comparison of simulated biomass components versus target components at the onset of different growth phases (days 0, 1, 3, 7, 10).

生物量组成模拟

代谢模型验证

The best and worst (blue, red) estimates of biomass composition were marked for each biomass component. (A) Bulk biomass components, (B) RNA nucleotides, (C) Protein amino acids, (D) Free amino acids,

NIAID Data Ecosystem40

Comparison of in silico predictions of single knockout mutants vs. pooled experimental results for anaerobic growth in minimal media.

代谢模型验证

基因敲除表型

Comparison of in silico predictions of single knockout mutants vs. pooled experimental results for anaerobic growth in minimal media.

Figshare2020-08-17 更新30