Genome-wide TFBS (Transcription Factor Binding Site) map analysis in HepG2 cells

We performed Chip-Seq analysis of 208 Factors in HepG2, using ENCODE Consortium Data with 2 replicates and 2 controls for each factors, to study transcription factor landscape within single cell type. ChipSeq data was produced by ENCODE Production Lab and submitted to ENCODE Data Coordination Center. Each of 208 TFs/DNA associated proteins included in this study were processed by the study group itself to generate only peaks passing IDR cutoff of 0.02 FDR(false discovery rate). An alternative analysis of ENCODE data.