BovReg TWAS Supplementary Tables for manuscript: A novel, reusable transcriptome-wide association study workflow used to map key genes linked to important cattle traits

Supplementary Tables for manuscript: A novel, reusable transcriptome-wide association study workflow used to map key genes linked to important cattle traits.Supplementary Table 1: GWAS sources, phenotypes, cohort sizes, and breed information used in the study. Supplementary Table 2: Details of the RNA-seq datasets used for model training. It includes accession IDs, tissue types, SNP sets, and the number of models pre- and post-filtering based on z-score p-value (0.1). Supplementary Table 3: BovReg Gene Models along with their corresponding GffCompare hits. It includes comparisons to known gene annotations. Supplementary Table 4: BovReg IDs and their best matching transcript annotations. It identifies the most accurate matches for each transcript model, including novel and known annotations. Supplementary Table 5: These set of tables contain the summary of significant gene and transcript associations across partner-breed combinations and tissues for each TWAS. Supplementary Table 6: The top genes associated with milk yield across more than one tissue or cohort. Supplementary Table 7: The top genes associated with protein percentage across more than one tissue or cohort. Supplementary Table 8: The top genes associated with stature across more than one tissue or cohort. Supplementary Table 9: Top hit genes with Bonferroni-adjusted p-value