Agrp2_Enhancer_sequences_and_trees

The gene tree for the agrp2 enhancer (enh.a) for the same 24 Great Lake cichlid species examined for the association of agrp2 expression and the presence of a stripe as well as Oreochromis niloticus was reconstructed in BEAST. Analyses of relationships were run five times for 20 million generations each to infer the locus history, and we discarded the first 10 million generations from each run as burn-in samples. We then combined the post burn-in trees to estimate the posterior probabilities of nodes subtending the 24 Great Lake cichlids for this single locus.The zip file contains the alignment of the 25 species (Agrp2_Enhancer_sequences.nex) and the gene trees of the 5 runs (Agrp2_Enhancer_trees_*run.trees).