Additional file 1: Table S1. of Genome-wide identification of copy number variations between two chicken lines that differ in genetic resistance to Marek’s disease

Summary of identified CNVs and CNVRs in the two chicken lines. For CNVs reported by CNVnator, the copy number denoted the absolute copy number estimated by CNVnator, and for those predicted by Pindel, the absolute copy number was not available and represented by ratio of the total number of uniquely mapped reads in the population supporting the CNV to that supporting the reference. Besides, Pindel can detected some not pure deletions (some fragments are inserted in the deletion region), and the inserted fragments were listed in the “Note” column. (XLSX 1591 kb)