Additional file 1 of Transcriptomic analysis of temporal shifts in berry development between two grapevine cultivars of the Pinot family reveals potential genes controlling ripening time

Additional file 1: Table S1. Clonal relation of PN and PNP confirmed by 24 SSR markers. Table S2. Sampling and phenotypical observations (BBCH) for 2014. Table S3. Sampling and phenotypical observations (BBCH) for 2017. Table S4. Pearsonr correlations of gene expression values over time between both years. Table S5. Top 500 genes influencing principal component PC1. Table S6. Top 500 genes influencing principal component PC2. Table S7. Cluster memberships of clusters obtained from the cluster analysis PN/PNP. Table S8. Cluster memberships of clusters obtained from the cluster analysis PN. Table S9. Cluster memberships of clusters obtained from the cluster analysis PNP. Table S10. GO term enrichment for the clusters from the cluster analysis of PN/PNP. Table S11. GO term enrichment for the clusters from the cluster analysis of PN. Table S12. GO term enrichment for the clusters from the cluster analysis of PNP. Table S13. Differentially expressed genes between PN and PNP in both years and filtering steps. Table S14. Overlap of 12 putatively ripening time control DEGs (time points: DAF 0-35 from 2014 intersecting with DAF 0-42 from 2017) and 388 veraison-specific DEGs (time points: DAF35+41 from 2014 intersecting with DAF42+49 from 2017) with previous transcriptomic grapevine studies. Table S15. VitisNet enrichment for intersecting DEGs. Table S16. VitisNet enrichment for regulatory DEGs. Table S17. VitisNet enrichment for veraison-specific DEGs. Table S18. Up- & Down-regulated TFs among the DEGs. Table S19. ENA sample identifier and metadata linked to the study for PNP RNA-Seq reads from 2014 (PRJEB39262). Table S20. ENA sample identifier and metadata linked to the study for PN RNA-Seq reads from 2014 (PRJEB39261). Table S21. ENA sample identifier and metadata linked to the study for PNP RNA-Seq reads from 2017 (PRJEB39264). Table S22. ENA sample identifier and metadata linked to the study for PN RNA-Seq reads from 2017 (PRJEB39263). Table S23. Sequences of primers used for qRT-PCR.