This dataset contains the training, validation, and test data used for transcription factor (TF)–DNA binding prediction in the TFBindFormer framework. It integrates genomic DNA sequence bins with tran
eGFP-ZNF311 ChIP-seq on human K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_Exter
Using ChIP-seq we identified the genome wide targets of BCL6 and LSD1 in lymhpoma cells (OCI-Ly1) with control siRNA or siRNA targeted to BCL6 Overall design: ChIP-seq was performed in lymphoma cells
MYB Binding: Protein 1 A (MYBBP1A) is hemizygous in a majority of PDAC due to chromosome 17p deletion which also affects TP53. We generated isogenic homozygous and hemizygous MYBBP1A knockout cel
Table 6 indicates the average AUC score across ten classifiers where training data from one TF (rows) was used to train a classifier that classified TFBS for another TF (columns).
