20151211_insect_hsp60_cis-reg_alignment

Dryad2016-01-01 更新2026-04-13 收录

顺式调控元件

昆虫热休克基因进化

数据链接：

http://datadryad.org/resource/doi:10.5061/dryad.8vj6j/8 数据链接链接失效反馈

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资源简介：

This file is a local alignment of the promoter region of hsp60 for 17 insect species used to screen for evolutionary conserved cis-regulatory heat shock elements.

创建时间：

2016-01-01

ETI dependent cis-element discovery using capture ATAC-seq.. ETI dependent cis-element discovery using capture ATAC-seq.

植物效应子触发免疫

顺式调控元件

We use AvrRps4 induced ETI as the background to establish ATAC capture seq (ATAC cseq) method in Arabidopsis, especially the leaf tissue. We are trying to find any RPS4/RRS1 dependent TF binding cisel

NIAID Data Ecosystem70

CRCdb

染色质可及性分析

顺式调控元件

CRCdb aims to identify CRCs for various cell/tissue types. The current version of CRCdb documented over 500 samples from NCBI, ENCODE and Roadmap.Especially, the number of CRCs in CRCdb is 8,611,549.

知名数据库30

Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data

顺式调控元件

成肌细胞分化基因调控

Linking regulatory DNA elements to their target genes, which may be located hundreds of kilobases away, remains challenging. Here, we introduce Cicero, an algorithm that identifies co-accessible pairs

NIAID Data Ecosystem10

Additional file 8: of Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

比较基因组学

顺式调控元件

MEME motif position weight matrices derived from the final 30 conserved stage-specific gene sets. These motifs were derived from conserved non-coding regions Âą3Â kb of S. carpocapsae orthologs that h

NIAID Data Ecosystem50

Most significant motifs associated with distance to the TSS from the linear analysis.

转录起始位点基序分析

顺式调控元件

The top 10 most significant motifs associated with distance to TSS (in base-pairs), for the upstream and downstream regions, analyzed separately. These factors are sorted by their false discovery rate

NIAID Data Ecosystem20

20151211_insect_hsp60_cis-reg_alignment

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