The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities - Supplementary Tables

Supplementary Table 1: A map between each of the genomes in mOTUs-db (3’747’151), the associated study and its metagenomic sample (in case of MAGs). Columns: GENOME → Unique mOTUs-db name of the genome STUDY → Unique mOTUs-db name of the study IS_MAG → True if genome is a MAG, otherwise False METAGENOMIC_SAMPLE → Unique name of the metagenomic sample or NA in case of non-MAG genome Example: GENOME STUDY IS_MAG METAGENOMIC_SAMPLE --------------------------------------------------------------------------------------------- ACIN21-1_SAMN05421555_MAG_00000001 ACIN21-1 True ACIN21-1_SAMN05421555_METAG RSGB23-1_GCA-006096615-V1_GENO_10000001 RSGB23-1 False NA Supplementary Table 2: A map between all non-MAG genomes (919’090) and their source (e.g. Refseq or JGI). Columns: GENOME → Unique mOTUs-db name of the genome SOURCE_SAMPLE_LINK → Link to the original location of this genome Example: #GENOME SOURCE_SAMPLE_LINK -------------------------------------------------------------------------------------------------------- JGIG23-1_GA0055041_GENO_10000001 https://gold.jgi.doe.gov/analysis_project?id=Ga0055041 RSGB23-1_GCA-006717865-V1_GENO_10000001 https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_006717865.1 Supplementary Table 3: A list of all metagenomic studies processed for the mOTUs-db, their number of samples, the number of reconstructed MAGs and the associated publication. Columns: STUDY --> Unique mOTUs-db study identifier BIOPROJECT --> Public identifier (NCBI/JGI) of metagenomic sequencing project SAMPLES --> Number of metagenomic samples MAGs --> Number of reconstructed MAGs PUBLICATION --> Link to publication Example: STUDY BIOPROJECT SAMPLES MAGs PUBLICATION ------------------------------------------------------------------------------------------------- ACIN21-1 PRJEB44456 58 1,110 https://www.nature.com/articles/s42003-021-02112-2 Supplementary Table 4: Mapping between mOTUs-db sample identifier, the associated biosample and the environment. Columns: SAMPLE --> Unique mOTUS-db sample identifier BIOSAMPLE --> Public identifier (NCBI/JGI) of metagenomic sample STUDY --> Unique mOTUs-db study identifier ENVIRONMENT --> Environment of metagenomic sample SOURCE_SAMPLE_LINK --> Link to the original location of this sample Example: #SAMPLE BIOSAMPLE STUDY ENVIRONMENT SOURCE_SAMPLE_LINK --------------------------------------------------------------------------------------------------------------------- ACIN21-1_SAMN05421555_METAG SAMN05421555 ACIN21-1 marine https://www.ncbi.nlm.nih.gov/biosample/SAMN05421555/ Supplementary Table 5: A list of environments covered in the mOTUs-db mapped to the respective NCBI taxonomy (if possible) Columns: TERM --> Unique environment name NCBI TAXONOMY ID --> Link to the NCBI taxonomy Example: TERM NCBI TAXONOMY ID ---------------------------------------------- activated sludge metagenome NCBI:txid942017 air metagenome NCBI:txid655179