Fiji/CellProfiler cell migration timelapse data set and code

This zenodo upload consists of: Fiji IJMacro script create_LabelledMasks.ijm CellProfiler pipeline TrackMate_CellProfiler.cppipe Matlab script Plot_per_cell.m Saved manually curated TrackMate project crop_1_60_ManualCuration.xml Saved Spots Results Table of manually curated TrackMate project: Spots in tracks statistics.csv CellProfiler pipeline output cp_output.zip Example data set crop_1_60.tif - subset of image data previously described in: Shafqat-Abbasi, H., Kowalewski, J. M., Kiss, A., Gong, X., Hernandez-Varas, P., Berge, U., Jafari-Mamaghani, M., Lock, J. G., and Strömblad, S. 2016. An analysis toolbox to explore mesenchymal migration heterogeneity reveals adaptive switching between distinct modes. eLife 5:e11384–e11384. Many thanks to Staffan Strömblad et al. for sharing the data.