Automated Molecular Cluster Growing for Explicit Solvation by Efficient Force Field and Tight Binding Methods
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https://figshare.com/articles/dataset/Automated_Molecular_Cluster_Growing_for_Explicit_Solvation_by_Efficient_Force_Field_and_Tight_Binding_Methods/19674290
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资源简介:
An automated and
broadly applicable workflow for the description
of solvation effects in an explicit manner is introduced. This method,
termed quantum cluster growth (QCG), is based on the semiempirical
GFN2-xTB/GFN-FF methods, enabling efficient geometry optimizations
and MD simulations. Fast structure generation is provided using the
intermolecular force field xTB-IFF. Additionally, the approach uses
an efficient implicit solvation model for the electrostatic embedding
of the growing clusters. The novel QCG procedure presents a robust
cluster generation tool for subsequent application of higher-level
(e.g., DFT) methods to study solvation effects on molecular geometries
explicitly or to average spectroscopic properties over cluster ensembles.
Furthermore, the computation of the solvation free energy with a supermolecular
approach can be carried out with QCG. The underlying growing process
is physically motivated by computing the leading-order solute–solvent
interactions first and can account for conformational and chemical
changes due to solvation for low-energy barrier processes. The conformational
space is explored with the NCI–MTD algorithm as implemented
in the CREST program, using a combination of metadynamics and MD simulations.
QCG with GFN2-xTB yields realistic solution geometries and reasonable
solvation free energies for various systems without introducing many
empirical parameters. Computed IR spectra of some solutes with QCG
show a better match to the experimental data compared to well-established
implicit solvation models.
创建时间:
2022-04-28



