apomixis_parallel_evolution, and Fortunella hindsii (Citrus hindsii )Genome sequencing and assembly

##The assemble(genome) files Citrus hindsii (Mini citrus)Genome assembly Citrus hindsii (Mini citrus)Genome assembly gene model gff3 file Citrus hindsii (Mini citrus)Genome assembly function annotation Citrus hindsii (Mini citrus)Genome assembly TE gff3 file ##The population dataset LD_pur.vcf.gz //The LD purning SNP vcfs (1.4 M sites) used in analysis log10_auxin.txt //The expression (log10) related to auxin pathway sjg.temergedref.fasta.gz //The TE insertion modify genome in popTE2 analysis SVs.vcf.gz //The SV vcfs used in the paper te-hierarchy.txt //The TE classfication in popTE2 analysis TPM_count.txt //All samples expression in TMP count unfiltered.vcf.gz //The unfiltered vcfs file (7.3 M sites, within 0.4 M indels)