Fusion probability predictions and sequencing results for clusters in breast cancer.

The gene order shown indicates “start” and “end” positions with respect to the direction of transcription. Note that VAPB/ZNFNA13 has low probability of fusion, but there are many pairs of genes with low probability of fusion in this region. The probability that any one of these gene pairs fuse is >.30. All clones in a cluster are non-redundant (the same clones do not reappear multiple times in a cluster). Additional clones have been sequenced [22], but these did not overlap any predicted fusion genes – these sequenced clones were also found not to contain fusion genes.
†A single clone contained more than two chromosomal segments, i.e. the clone is not a simple fusion of two genomic loci.