Additional file 4: Table S4. HIV-1 transcripts identified in the different cellular models. Reads mapping to each isoform were counted and pooled for each HIV-1 expression model. Isoforms represented
These files contain the nanopore long reads produced by R9.4 MinION, basecalled and demultiplexed by Albacore v2.1.3. Half of each strain's sample underwent end repair, and half did not - these wer
Additional file 3: Table S3. NL4-3 splice site counts in HIV-1 expressing samples. Reads overlapping potential SD/SA sites were counted and pooled for each HIV-1 expressing sample (infected T cells; T
