Supplementary Figure:nif gene BLAST results (raw phylogeny and alignments)

NIAID Data Ecosystem2026-03-13 收录

数据链接：

https://figshare.com/articles/dataset/Supplementary_Figure_nif_gene_BLAST_results_raw_phylogeny_and_alignments_/19335644 数据链接链接失效反馈

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Proteins were aligned using MAFFTv7. Phylogeny generated using FastTreev2.

创建时间：

2022-03-10

Domain phylogenetics for the PKZILLAs

聚酮合酶进化

生物信息学系统发育

Source data files, executable code, and results for A-type PKZILLA PKS domain phylogenetic analysis. Difference from previous version: Difference between v1.0 to v1.1 of this Zenodo item series: is

NIAID Data Ecosystem50

Azoarcus taiwanensis strain:NSC3 Genome sequencing and assembly. Azoarcus taiwanensis strain:NSC3

微生物比较基因组学

固氮基因进化分析

Comparative genomics gives insights into the taxonomy of the Azoarcus-Aromatoleum group and reveals separate origins of nif in the plant-associated Azoarcus and non-plant-associated Aromatoleum sub-gr

NIAID Data Ecosystem20

Figure 3B. Placement of new MAGs in the global lucinid symbiont tree reveals patchiness in the distribution of nitrogen fixation genes, even within species clades - Alignment and newick tree

共生体系统发育

固氮基因进化分析

Concatenated alignment of 120 conserved bacterial marker genes from the MAGs was obtained with the GTDB-Tk v2.1.1 (Genome Taxonomy Database Toolkit) classify workflow, including MAGs published in this

Figshare2023-10-09 更新00

Figure 3B. Placement of new MAGs in the global lucinid symbiont tree reveals patchiness in the distribution of nitrogen fixation genes, even within species clades - Alignment

微生物共生基因组学

固氮基因进化分析

Figshare2023-10-09 更新40

Aromatoleum toluvorans strain:Td21 Genome sequencing and assembly. Aromatoleum toluvorans strain:Td21

微生物比较基因组学

固氮基因进化分析

NIAID Data Ecosystem20