CATH Structural domains in AlphaFold2 models for 21 model organisms

CATH structural domain assignments for AlphaFold2 models in 21 model organisms.

The table cath-v4_3_0.alphafold-v2.2022-11-22.tsv contains the domain assignments with information on model quality, CATH superfamily and Class, organism, average pLDDT, percentage of residues not in secondary structure, globularity and domain origin (CATH-PDB, CATH-HMM,Pfam,newfams).

Organisms included:

Arabidopsis thaliana

Caenorhabditis elegans

Candida albicans

Danio rerio

Dictyostelium discoideum

Drosophila melanogaster

Escherichia coli

Glycine max

Homo sapiens

Leishmania infantum

Methanocaldococcus jannaschii

Mus musculus

Mycobacterium tuberculosis

Oryza sativa

Plasmodium falciparum

Rattus norvegicus

Saccharomyces cerevisiae

Schizosaccharomyces pombe

Staphylococcus aureus

Trypanosoma cruzi

Zea mays

The archive

cath-v4_3_0.alphafold-v2.2022-11-22.by_superfamily.tgz

contains all domains assigned by CATH in the dataset as PDB files, divided by superfamily.

Alternatively, if you're interested in a particular organism, an individual tarball containing all CATH domains as PDB files is available

e.g. cath-v4_3_0.alphafold-v2.2022-11-22.arabidopsis_thaliana.tgz

All domains included in this release are named as af_[UniProt_ID]_[start]_[stop].