Additional file 1: of C/D box sRNA-guided 2′-O-methylation patterns of archaeal rRNA molecules

Identified archaeal C/D box sRNAs and predicted rRNA target sites. (Sheet 1) The identified C/D box sRNAs are listed for each of the seven archaeal species along with their genomic coordinates and orientation. The box C/C′ and box D/D′ sequences are in red and green respectively. (Sheet 2) The predicted sites of 2′-O-ribose methylation in 16S and 23S rRNA for the sRNAs are listed. Predictions are based on the criteria stated in the methods section. Some guides are predicted to have more than one target. Guides that did not meet the prediction criteria are indicated by NP (No Prediction); many of these have predicted targets in tRNAs or 5S rRNA that are not catalogued. Predictions followed by an asterisk (*) indicate that there is a mismatch base pair at the target site in the region of guide-target complementarity; in these instances the second guide in the sRNA has a predicted target that is within 100 nts of the mismatch site. (XLSX 104 kb)