PigGTEx_v0 - Analysis Pipeline
收藏科学数据银行2023-10-30 更新2026-04-23 收录
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资源简介：
This repository contains analysis pipelines used by the pilot phase (V0) of PigGTEx project, including:Whole-genome sequence alignment, SNP calling, and quality controlRNA-seq alignment, quantification, SNP calling, genotype imputation, and quality controlTissue-specific gene expression and co-expression analysisBioinformatics analysis of WGBS dataSingle-cell RNA-Seq analysisBreed prediction for RNA-Seq samplesCis-heritability estimation for gene expressionMolecular QTL (molQTL) mapping, meta-analysis, effect size measurement, and evolutionary conservationAllele-specific expression (ASE) analysisFunctional annotation (snpEff and chromatin state) of molQTLInterpreting GWAS loci with molQTL: enrichment, expression-mediated heritability, transcriptome-wide association study, Mendelian Randomization, and co-localizationComparative analysis between pig and human
提供机构：
The PigGTEx Consortium
创建时间：
2023-04-30
