D2 - Phylogenetic trees - 28S, 18S, concat28S and 18S, 16S, rbcL & psbA

The files used to create the phylogenies for the Meringosphaera host 18S rDNA, plastid 16S rDNA, plastid rbcL and plastid psbA. <br> For each gene, there are 5 files: 1. A fasta file with the identified SAG copies and references Eukaryote sequences. The name of the file ends with ".fasta" 2. The Mafft alignment file of these sequences, file name ends with ".Mafft-auto.fa" 3. The alignment file after trimming with trimAI, file name ends with "trimAI-gappy.fa" 4. The log file of the IQtree process ("IQtree.log") 5. The resulting IQ tree treefile (".IQtree.tre") <br> For the concatenated 28S and 18S the sequences are in a mase file, and then the tree file is presented. For the 28S alone, the fasta file (extracted from the adove mase file but having applied the relevant mask) is presented alongside the tree file. <br> Also contains the figure (D2.1 Separate phylogenies of the 18S and 28S rDNA sequences.png), which includes its own legend.