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4C-ker: A method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments

ChEBI2016-02-27 更新2026-07-12 收录

染色质构象

基因组互作

数据链接：

https://www.ebi.ac.uk/biostudies/ArrayExpress/studies/E-GEOD-77645 数据链接链接失效反馈

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资源简介：

4C-ker: A method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments

应用场景：

创建时间：

2016-02-27

染色质构象

脂肪生成

ING1b and GADD45a are nuclear proteins involved in the regulation of cell growth, apoptosis and DNA repair. We previously found that ING1b is essential to target GADD45a-mediated active DNA-demethylat

NIAID Data Ecosystem70

The embryo-larval and adult parts of the zebrafish major alpha/beta-globin gene locus are functionally and structurally independent. Danio rerio

染色质构象

珠蛋白基因表达调控

We have demonstrated that, in developing Danio rerio, the embryo-larval and adult subloci of the major globin locus acquire stage-specific hyperacetylation of histone H3 and that H3 hyperacetylation p

NIAID Data Ecosystem50

Nuclear Organization of Lens Epithelium and Fiber Cells in Newborn Lens

晶状体细胞分化

染色质构象

Cellular differentiation is marked by temporally and spatially coordinated gene expression regulated at multiple levels within the nucleus. Sequence-specific DNA-binding transcription factor CTCF EDIT

NIAID Data Ecosystem10

Chromatin structure dynamics of hoxa13a, hoxa13b and hoxd13a loci during zebrafish development.

染色质构象

发育基因调控

We designed 4C-Seq experiments for hoxa13a, hoxa13b and hoxd13a promoters in three developmental stages in zebrafish embryos: 24, 48 and 60 hpf. 4C-seq samples for three different hox13 genes promoter

NIAID Data Ecosystem60

Genome wide SMC1-mediated chromatin looping changes in shBORIS and shLUC resistant Kelly cells.

染色质构象

神经细胞表观遗传学

We performed SMC1-mediated ChIA-PET analysis in both shBORIS and shLUC resistant Kelly cells. Overall design: SMC1 ChIA-PET data from shBORIS and shLUC resistant Kelly cells were generated by deep seq

NIAID Data Ecosystem30

4C-ker: A method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments

资源简介：

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